pwtools.batch.Machine

class pwtools.batch.Machine(hostname=None, subcmd=None, scratch=None, home=None, template=None, filename=None)[source]

Bases: object

Container for machine-specific stuff.

Most of the machine-specific settings can (and should) be placed in the corresponding job template file. But some settings need to be in sync between files like the scratch dir, the $HOME etc.

Useful to predefine commonly used machines.

__init__(hostname=None, subcmd=None, scratch=None, home=None, template=None, filename=None)[source]
Parameters:

  • hostname (st) – machine name (‘mars’, ‘local’, …)

  • subcmd (str) – shell command to submit jobfiles (e.g. ‘bsub <’, ‘qsub’)

  • scratch (str) – scratch dir (like ‘/scratch’)

  • home (str) – $HOME

  • template (FileTemplate) –

  • filename (str) – full jobfile name for FileTemplate (e.g. ‘calc.templ/job.local’), use either this or template

Methods

get_jobfile_basename()

get_sql_record()

Return a dict of SQLEntry instances.